Software
PyView: A general purpose tool for analyzing calcium imaging data
- 1Universität Konstanz, Konstanz, Germany
- 2Champalimaud Centre for the Unknown, Avenida de Brasília, 1400-038 Lisboa, Portugal
DOI: 10.12751/g-node.ezh5w2 BROWSE REPOSITORY BROWSE ARCHIVE DOWNLOAD ARCHIVE (ZIP 4.8 MiB)
Published 04 Feb. 2023 | License 3-Clause BSD License
Description
Welcome to the archived version of the repository containing PyView, the python implementation of View! PyView is a general purpose tool to analyze calcium imaging data of responses to sensory stimuli. It provides a powerful GUI to interactively visualize, analyse and assess the quality of imaging stacks; and flexibly select steps and parameters for removing artifacts and for estimating neural activity levels. The GUI is based on the core functions and classes of PyView that can be used for identical batch processing, i.e. running all experimental measurements through the processing steps selected above using one single set of parameters to produce time traces, 2D images or 3D movies
Keywords
| Neuroscience | Python | Calcium imaging |References
- Kumaraswamy A, Raiser G, Galizia CG (2023). PyView: A general purpose tool for analyzing calcium imaging data. Journal of Open Source Software, 8(82), 4936. https://doi.org/10.21105/joss.04936
- Kumaraswamy A, Galizia CG (2022) Collection of Datasets for testing PyVIEW. G-Node. https://doi.org/10.12751/g-node.4c44i5
Funding
- Federal Ministry of Education and Research (BMBF) as part of the Excellence Strategy of the German Federal and State Governments
- Baden-Württemberg Ministry of Science as part of the Excellence Strategy of the German Federal and State Governments